NAME
g_rama - computes Ramachandran plots
VERSION 4.0.1
SYNOPSIS
g_rama -f traj.xtc -s topol.tpr -o rama.xvg -[no]h -nice int -b time -e
time -dt time -[no]w -[no]xvgr
DESCRIPTION
g_rama selects the Phi/Psi dihedral combinations from your topology
file and computes these as a function of time. Using simple Unix tools
such as grep you can select out specific residues.
FILES
-f traj.xtc Input
Trajectory: xtc trr trj gro g96 pdb cpt
-s topol.tpr Input
Run input file: tpr tpb tpa
-o rama.xvg Output
xvgr/xmgr file
OTHER OPTIONS
-[no]hno
Print help info and quit
-nice int 19
Set the nicelevel
-b time 0
First frame (ps) to read from trajectory
-e time 0
Last frame (ps) to read from trajectory
-dt time 0
Only use frame when t MOD dt = first time (ps)
-[no]wno
View output xvg, xpm, eps and pdb files
-[no]xvgryes
Add specific codes (legends etc.) in the output xvg files for the
xmgrace program
SEE ALSO
gromacs(7)
More information about GROMACS is available at
<http://www.gromacs.org/>.
Thu 16 Oct 2008 g_rama(1)