NAME
velveth - simple hashing program (colorspace version)
DESCRIPTION
velveth - simple hashing program Version 0.7.61
OPTIONS
-strand_specific
: for strand specific transcriptome sequencing data (default:
off)
Output:
directory/Roadmaps directory/Sequences
[Both files are picked up by graph, so please leave them there]
Version 0.7.61
-strand_specific
: for strand specific transcriptome sequencing data (default:
off)
Output:
directory/Roadmaps directory/Sequences
[Both files are picked up by graph, so please leave them there]
COPYRIGHT
Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk)
This is free software; see the source for copying conditions. There is
NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.
Compilation settings: CATEGORIES = 2 MAXKMERLENGTH = 31
Usage: ./velveth directory hash_length {[-file_format][-read_type]
filename} [options]
directory
: directory name for output files
hash_length
: odd integer (if even, it will be decremented) <= 31 (if above,
will be reduced)
filename
: path to sequence file or - for standard input
File format options:
-fasta
-fastq
-fasta.gz
-fastq.gz
-sam
-bam
-eland
-gerald
Read type options:
-short
-shortPaired
-short2
-shortPaired2
-long
-longPaired
Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk)
This is free software; see the source for copying conditions. There is
NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.
Compilation settings: CATEGORIES = 2 MAXKMERLENGTH = 31
Usage: ./velveth directory hash_length {[-file_format][-read_type]
filename} [options]
directory
: directory name for output files
hash_length
: odd integer (if even, it will be decremented) <= 31 (if above,
will be reduced)
filename
: path to sequence file or - for standard input
File format options:
-fasta
-fastq
-fasta.gz
-fastq.gz
-sam
-bam
-eland
-gerald
Read type options:
-short
-shortPaired
-short2
-shortPaired2
-long
-longPaired