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NAME

       psw — Protein Smith-Waterman and other comparisons

SYNOPSIS

       psw [options ... ]  { seq1 seq2 }

DESCRIPTION

       psw  is  a  short  and  sweet  program  for  calculating smith waterman
       alginments quickly. It was mainly written  as  C  driver  to  test  the
       underlying code which is more useful in things like the Perl port.

OPTIONS

       -help     Show summary of options.

       -version  Show version of program.

SEE ALSO

       dba (1), dnal (1), estwise (1), estwisedb (1), genewise (1), genewisedb
       (1),  genomewise  (1),  promoterwise  (1),  pswdb  (1),  scanwise  (1),
       scanwise_server (1).

AUTHOR

       This  manual  page was written by Philipp Benner mail@philipp-benner.de
       for the Debian system (but may  be  used  by  others).   Permission  is
       granted to copy, distribute and/or modify this document under the terms
       of the  GNU  General  Public  License,  Version  2  any  later  version
       published by the Free Software Foundation.

       On  Debian systems, the complete text of the GNU General Public License
       can be found in /usr/share/common-licenses/GPL.