NAME
MolPhy - program package for MOLecular PHYlogenetics
Molphy consists of several programs:
protml - Maximum Likelihood Inference of Protein Phylogeny
nucml - Maximum Likelihood Inference of Nucleic Acid Phylogeny
protst - Basic Statistics of Protein Sequences
nucst - Basic Statistics of Nucleic Acid Sequence
njdist - Neighbor Joining Phylogeny from Distance Matrix
totalml - Total ML Inference of Molecular Phylogeny
SYNOPSIS
protml [switches] sequence_file [topology_file]
nucml [switches] sequence_file [topology_file]
protst [switches] sequence_file
nucst [switches] sequence_file
njdist [switches] distance_matrix_file
totalml [switches] LLS_files
DESCRIPTION
This is the Debian GNU/Linux version of the MOLPHY (ProtML)
distribution, version 2.3. Copyright (c) 1992-1996, Jun Adachi &
Masami Hasegawa. All rights reserved.
MOLPHY is a program package for MOLecular PHYlogenetics.
ProtML is a main program in MOLPHY for inferring evolutionary trees
from PROTein (amino acid) sequences by using the Maximum Likelihood
method.
Each single program has a -h switch which shows some help.
AUTHOR
This manual page was written by Andreas Tille <tille@debian.org>, for
the Debian GNU/Linux system (but may be used by others).