mipe2snps.pl - Generates list of SNPs from a MIPE file included in output: PCR ID, SNP ID, SNP pos, SNP amb, allele freqs, number of animals genotyped, SNP rank, flanking seqs, SNP remarks based on MIPE version v1.1 arguments: * mipe_file * (optional) list of PCR IDs
mipe2snps.pl your_file.mipe <pcr_id1> <pcr_id2>
See http://mipe.sourceforge.net
Jan Aerts (jan.aerts@bbsrc.ac.uk)