Man Linux: Main Page and Category List

NAME

       hmmindex - create a binary SSI index for an HMM database

SYNOPSIS

       hmmindex [options] database

DESCRIPTION

       hmmindex is a utility that creates a binary SSI ("squid sequence index"
       format) index for an HMM database file called database.  The new  index
       file is named database.ssi.  An SSI index file is required for hmmfetch
       to work, and also for the PVM implementation of hmmpfam.

OPTIONS

       -h     Print brief help; includes version number  and  summary  of  all
              options, including expert options.

SEE ALSO

       Master  man  page,  with  full  list of and guide to the individual man
       pages: see hmmer(1).

       For complete documentation, see the  user  guide  that  came  with  the
       distribution    (Userguide.pdf);   or   see   the   HMMER   web   page,
       http://hmmer.wustl.edu/.

COPYRIGHT

       Copyright (C) 1992-2003 HHMI/Washington University School of Medicine.
       Freely distributed under the GNU General Public License (GPL).
       See the file COPYING in your distribution for details on redistribution
       conditions.

AUTHOR

       Sean Eddy
       HHMI/Dept. of Genetics
       Washington Univ. School of Medicine
       4566 Scott Ave.
       St Louis, MO 63110 USA
       http://www.genetics.wustl.edu/eddy/