NAME
dcmdjpeg - Decode JPEG-compressed DICOM file
SYNOPSIS
dcmdjpeg [options] dcmfile-in dcmfile-out
DESCRIPTION
The dcmdjpeg utility reads a JPEG-compressed DICOM image (dicomfile-
in), decompresses the JPEG data (i. e. conversion to a native DICOM
transfer syntax) and writes the converted image to an output file
(dicomfile-out).
PARAMETERS
dcmfile-in DICOM input filename to be converted
dcmfile-out DICOM output filename
OPTIONS
general options
-h --help
print this help text and exit
--version
print version information and exit
-v --verbose
verbose mode, print processing details
-d --debug
debug mode, print debug information
input options
input file format:
+f --read-file
read file format or data set (default)
+fo --read-file-only
read file format only
-f --read-dataset
read data set without file meta information
# This option allows to decompress JPEG compressed DICOM objects that have
# been stored as dataset without meta-header. Such a thing should not exist
# since the transfer syntax cannot be reliably determined without meta-header,
# but unfortunately it does.
processing options
color space conversion options:
+cp --conv-photometric
convert if YCbCr photom. interpr. (default)
# If the compressed image uses YBR_FULL or YBR_FULL_422 photometric
# interpretation, convert to RGB during decompression.
+cl --conv-lossy
convert YCbCr to RGB if lossy JPEG
# If the compressed image is encoded in lossy JPEG, assume YCbCr
# color model and convert to RGB.
+ca --conv-always
always convert YCbCr to RGB
# If the compressed image is a color image, assume YCbCr color model
# and convert to RGB.
+cn --conv-never
never convert color space
# Never convert color space during decompression.
planar configuration options:
+pa --planar-auto
automatically determine planar configuration
from SOP class and color space (default)
# If the compressed image is a color image, store in color-by-plane
# planar configuration if required by the SOP class and photometric
# interpretation. Hardcopy Color images are always stored color-by-
# plane, and the revised Ultrasound image objects are stored color-by-
# plane if the color model is YBR_FULL. Everything else is stored
# color-by-pixel.
+px --color-by-pixel
always store color-by-pixel
# If the compressed image is a color image, store in color-by-pixel
# planar configuration.
+pl --color-by-plane
always store color-by-plane
# If the compressed image is a color image, store in color-by-plane
# planar configuration.
SOP Instance UID options:
+ud --uid-default
keep same SOP Instance UID (default)
# Never assigns a new SOP instance UID.
+ua --uid-always
always assign new UID
# Always assigns a new SOP instance UID
output options
output file format:
+F --write-file
write file format (default)
-F --write-dataset
write data set without file meta information
output transfer syntax:
+te --write-xfer-little
write with explicit VR little endian (default)
+tb --write-xfer-big
write with explicit VR big endian TS
+ti --write-xfer-implicit
write with implicit VR little endian TS
post-1993 value representations:
+u --enable-new-vr
enable support for new VRs (UN/UT) (default)
-u --disable-new-vr
disable support for new VRs, convert to OB
group length encoding:
+g= --group-length-recalc
recalculate group lengths if present (default)
+g --group-length-create
always write with group length elements
-g --group-length-remove
always write without group length elements
length encoding in sequences and items:
+e --length-explicit
write with explicit lengths (default)
-e --length-undefined
write with undefined lengths
data set trailing padding (not with --write-dataset):
-p= --padding-retain
do not change padding (default if not --write-dataset)
-p --padding-off
no padding (implicit if --write-dataset)
+p --padding-create [f]ile-pad [i]tem-pad: integer
align file on multiple of f bytes
and items on multiple of i bytes
COMMAND LINE
All command line tools use the following notation for parameters:
square brackets enclose optional values (0-1), three trailing dots
indicate that multiple values are allowed (1-n), a combination of both
means 0 to n values.
Command line options are distinguished from parameters by a leading ’+’
or ’-’ sign, respectively. Usually, order and position of command line
options are arbitrary (i.e. they can appear anywhere). However, if
options are mutually exclusive the rightmost appearance is used. This
behaviour conforms to the standard evaluation rules of common Unix
shells.
In addition, one or more command files can be specified using an ’@’
sign as a prefix to the filename (e.g. @command.txt). Such a command
argument is replaced by the content of the corresponding text file
(multiple whitespaces are treated as a single separator) prior to any
further evaluation. Please note that a command file cannot contain
another command file. This simple but effective approach allows to
summarize common combinations of options/parameters and avoids longish
and confusing command lines (an example is provided in file
share/data/dumppat.txt).
ENVIRONMENT
The dcmdjpeg utility will attempt to load DICOM data dictionaries
specified in the DCMDICTPATH environment variable. By default, i.e. if
the DCMDICTPATH environment variable is not set, the file
<PREFIX>/lib/dicom.dic will be loaded unless the dictionary is built
into the application (default for Windows).
The default behaviour should be preferred and the DCMDICTPATH
environment variable only used when alternative data dictionaries are
required. The DCMDICTPATH environment variable has the same format as
the Unix shell PATH variable in that a colon (’:’) separates entries.
The data dictionary code will attempt to load each file specified in
the DCMDICTPATH environment variable. It is an error if no data
dictionary can be loaded.
SEE ALSO
dcmcjpeg(1)
COPYRIGHT
Copyright (C) 2001-2005 by Kuratorium OFFIS e.V., Escherweg 2, 26121
Oldenburg, Germany.