NAME
WarpTensorImageMultiTransform - part of ANTS registration suite
DESCRIPTION
WarpImageMultiTransform ImageDimension moving_image output_image [-R
reference_image | --tightest-bounding-box] (--reslice-by-header)
[--use-NN (use Nearest Neighbor Interpolator)][--ANTS-prefix
prefix-name | --ANTS-prefix-invert prefix-name] {[deformation_field |
[-i] affine_transform_txt | --Id | [-i] --moving-image-header / -mh |
[-i] --reference-image-header / -rh]} Example: Reslice the image:
WarpImageMultiTransform 3 Imov.nii Iout.nii --tightest-bounding-box
--reslice-by-header Reslice the image to a reference image:
WarpImageMultiTransform 3 Imov.nii Iout.nii -R Iref.nii
--tightest-bounding-box --reslice-by-header Note: -i will use the
inversion of the following affine transform. --tightest-bounding-box
will be overrided by -R reference_image if given. It computes the
tightest bounding box using all the affine transformations. --Id uses
the identity transform. --moving-image-header or -mh in short will use
the orientation header of the moving image file. This is typically not
used with --reslice-by-header. --reference-image-header or -rh in
short will use the orientation header of the fixed image file. This is
typically not used with --reslice-by-header. --reslice-by-header uses
the orientation matrix and origin encoded in the image file header. It
can be used together with -R. This is typically not used together with
any other transforms. --reslice-by-header is equvalient to -i -mh, or
-fh -i -mh if used together with -R.
For ANTS users: To use with the deformation field and the affine
transform files generated from ANTS: --ANTS-prefix prefix-name
--ANTS-prefix-invert prefix-name Example: 3 moving_image output_image
-R reference_image --ANTS-prefix abcd.nii.gz Applies
abcdWarpxvec.nii.gz/abcdWarpyvec.nii.gz/abcdWarpzvec.nii.gz and then
abcdAffine.txt. Use this with ANTS to get the moving_image warped into
the reference_image domain. 3 reference_image output_image -R
moving_image --ANTS-prefix-invert abcd.nii.gz --ANTS-invert Applies the
inversion of abcdAffine.txt and then
abcdInverseWarpxvec.nii.gz/abcdInverseWarpyvec.nii.gz/abcdInverseWarpzvec.nii.gz.
Use this with ANTS to get the reference_image warped into the
moving_image domain. Note: prefix name "abcd" without any extension
will use ".nii.gz" by default