NAME
ImageSetStatistics - part of ANTS registration suite
DESCRIPTION
Usage: ./ImageSetStatistics ImageDimension controlslist.txt
outimage.nii whichstat {roi.nii}
{imagelist2forsimilarityweightedstats.txt}
whichstat = 0:
median, 1: max prob appearance , 2: weighted mean appearance
, 3: trimmed mean , 4 : max value , option 5 :
similarity-weighted (must pass imagelist2 as well) else median ,
option 6 : same as similarity-weighted option 5 but the label
corresponds to the image that provides the best local match ...
useful if you want to MRF smooth these indices , option 7 :
similar to 5 but expects the max-value to be stored in the ROI
image and uses it to get the intensity ...
example:
ImageSetStatistics 3 imagelist.txt maxvalueimage.nii.gz 4
similarity weighted --- pass in a list of similarity images here
which will be used to select the best label --- thus, number of
similarity images must match the number of label images .