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       fahash - sequence hash builder for reverse e-PCR


       fahash    [-hV]    -b   hash-file   [-w   wdsize]   [-f   period]   [-F
       fragment_min,fragment_max] [-k] [-c cachesize] [-v 1|2] famap-file  ...

       fahash [-hV] -T hash-file [-o outfile]


       The  program  fahash  is  part  of the e-PCR suite and is used to build
       hash-files,  and  output  word  usage  statistics  for  reverse   e-PCR


       -b hash-file
              Build hash tables (hash-file) from sequence files,

       -T hash-file
              Print word usage statistics for hash-file

       -o outfile
              Write output to file ‘outfile’

       -w wordsize
              Set word size when building hash tables

       -f period
              Set discontiguity when building hash tables

       -k     Skip repeats when building hash-file

       -F min,max
              Set watermarks for fragment size (in Mb) (version 1 only)

       -c cachesize
              Set cache size (version 2 only)

       -v ver Use format version (1|2, 2 is default)


        famap -tN -b genome.famap org/chr_*.fa

        fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap

        re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200

       See famap(1) and re-pcr(1)



       bioperl(1), e-pcr(1), famap(1) and re-pcr(1)


       This  manual  page  was written by Andreas Tille <> for
       the Debian system (but may be used by others).  Permission  is  granted
       to  copy, distribute and/or modify this document under the terms of the
       GNU General Public License, Version 2 any later  version  published  by
       the Free Software Foundation.

       On  Debian systems, the complete text of the GNU General Public License
       can be found in /usr/share/common-licenses/GPL.

Reverse e-PCR: sequence hash buildAprilr2008 2.3.9