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       br_bioflat.rb — OBDA flat file indexer



       br_bioflat.rb [--search]  [options...]

       br_bioflat.rb   [--search]    [--location   DIR]    [--dbname   DBNAME]
       [options...]  [KEYWORDS]

       Create index:

       br_bioflat.rb   [--create]    [--location   DIR]    [--dbname   DBNAME]
       [--format genbank|embl|fasta]  [options...]  [--files FILES...]

       Update index:

       br_bioflat.rb   [--update]    [--location   DIR]    [--dbname   DBNAME]
       [options...]  [--files FILES...]

       Show namespaces:

       br_bioflat.rb [--show-namespaces]  [--location DIR]  [--dbname  DBNAME]

       br_bioflat.rb [--show-namespaces]  [--format=CLASS]

       br_bioflat.rb [--show-namespaces]  [--files file]


       This manual page documents briefly the br_bioflat.rb.

       br_bioflat.rb is an OBDA flat file indexer.


       --search  Search a database for keywords.

       --namespace         --name
                 Only   valid   with  the  --search  option.  Set  the  search
                 namespace.  You can set this option multiple times to specify
                 more than one namespace.

       --create  Create an index.

                 Specify the directory.

       --dbname  Specify the name of the database.

       --primary           --secondary
                 Set  the primary and secondarynamespace of the index. Default
                 primary/secondary namespaces depend  on  the  format  of  the
                 flatfiles.  Only valid with the --create option.

                 Add  secondary  namespaces  to the default specification. You
                 can use this option many times. Only valid with the  --create

       --update  Update an index

       --sort    Sort  an  index.  You  can  set this to a path to an external
                 sorting program, or BUILTIN to use the builtin  sort  module.
                 This  option  is  only  valid with --create (or --update) and
                 --type flat options.

       --renew   Re-read all flatfiles and update whole index. This option  is
                 only valid with the --update option.

                 Display the namespaces for an index file.


       This  manual  page was written by David Nusinow for
       the Debian system (but may be used by others).  Permission  is  granted
       to  copy, distribute and/or modify this document under the terms of the
       GNU General Public License, Version 2 any later  version  published  by
       the Free Software Foundation.

       On  Debian systems, the complete text of the GNU General Public License
       can be found in /usr/share/common-licenses/GPL.