atlasquery - commandline tool to query brain atlases about stereotaxic
atlasquery -a "<atlasname>" [-m <maskimage>] [-c <X>,<Y>,<Z>]
atlasquery provides information about stereotaxic brain coordinates by
querying brain atlases. FSL provides nine different atlases that can be
used with atlasquery. Please note that these atlases are covered by a
non-commercial licenses and are not part of Debian.
However, as the format of the atlases is documented in the HTML
documentation of FSLView it is easy the produce new atlases (at least
The -a option which selects the to be queried atlas is compulsory.
Atlases should be put into /usr/share/fsl/data/atlases. By setting the
environment variable FSLATLASPATH to a different path one can customize
Please see /usr/share/doc/fslview/README.Debian for more information.
Switch on diagnostic messages.
Display a short usage description.
A mask image to use during structural lookups.
Print a list of the available atlases.
If you discover an bugs please report them either to the FSL mailing
list or to email@example.com.
atlasqeury was written by Dave Flitney.
This manual page was written by Michael Hanke
<firstname.lastname@example.org>, for the Debian project (but may be used by
FSLView Homepage: http://www.fmrib.ox.ac.uk/fsl/fslview
FSL Homepage: http://www.fmrib.ox.ac.uk/fsl/