Man Linux: Main Page and Category List


       mollist - get identifiers list
       molrev - reverse DNA sequences
       molcat - concatenate sequences
       molcut - get partial sequences
       molmerge - merge sequences
       nuc2ptn - DNA -> Amino acid
       rminsdel - remove INS/DEL sites
       molcodon - get specified codon sites
       molinfo - get varied sites
       mol2mol - MOLPHY format beautifer
       int2mol - Interleaved -> MOLPHY
       mol2int - MOLPHY -> Interleaved
       mol2phy - MOLPHY -> Sequential
       phy2mol - Sequential -> MOLPHY
       must2mol - MUST -> MOLPHY
       many more perl conversion utilities which are not further described


       MolPhy Utilities is a program package for MOLecular PHYlogenetics which
       includes several Perl utilities:

       mollist [sequence_file]
       molrev [sequence_file]
       molcat [sequence_file]
       molcut [sequence_file]
       molmerge [sequence_file]
       nuc2ptn [switches] [sequence_file]
       rminsdel [switches] [sequence_file]
       molcodon [sequence_file]
       molinfo [switches] [sequence_file]
       mol2mol [sequence_file]
       inl2mol [sequence_file]
       mol2int [sequence_file]
       mol2phy [sequence_file]
       phy2mol [sequence_file]
       must2mol [sequence_file]
       ali2mol [sequence_file]
       clus2mol [sequence_file]
       degene4l [switches] [sequence_file]
       degene4 [switches] [sequence_file]
       disjoint [sequence_file]
       dna2ami [options] [no_align_files]
       eali2mol [EMBL_ALIGN_file]
       egetcds [EMBL_file]
       getcds [EMBL_file]
       egetcds [Genbank_file]
       info2mol [sequence_file]
       infocode [switches] [sequence_file]
       infocode [switches] [sequence_file]
       mc2mol [sequence_file]
       mega2mol [sequence_file]
       mol2info [sequence_file]
       mol2seq [sequence_file]
       molcons [sequence_file]
       molsplit [sequence_file]
       njt2tpl [machine_readable_tree_with_branch_length]
       mol2mol [sequence_file]
       nuc2NUC [sequence_file]
       rmid3 [switches] [sequence_file]
       rmleu [switches] [sequence_file]
       rmsyno [switches] [sequence_file]
       seq2mol [sequence_file]
       seqwrap [file]


       This  is  the  Debian  GNU/Linux  version  of   the   MOLPHY   (ProtML)
       distribution,   version  2.3.   Copyright  (c)  1992-1996, Jun Adachi &
       Masami Hasegawa.  All rights reserved.

       MOLPHY is a program package for MOLecular PHYlogenetics.

       The perl utilities above are usefull to convert  different  formats  of
       phylogenetic data.


       This  manual  page was written by Andreas Tille <>, for
       the Debian GNU/Linux system (but may be used by others).